SNiPlay Galaxy workflows

All SNiPlay processes are also available as Galaxy workflows in the South Green Galaxy instance.

1- SNiPlay complete workflow

Galaxy workflow for exploration and large scale analyses of SNP polymorphisms (filtering, density, vcftools, diversity, linkage disequilibrium, population structure)

2- GWAS workflow

GWAS workflow testing two softwares for association studies: Tassel and MLMM

SNiPlay Galaxy wrappers can be installed on your own Galaxy instance using the Galaxy Tool Shed.
Search for repository called "sniplay_complete_workflow".

southgreen IRD INRA