SNiPloid 1. How to proceed? 2. Load your data 3. Run Type of analysis:     Polyploid vs Polyploid Polyploid vs parental diploid Minimum read depth to consider the position for polyploid: Minimum read depth to consider the position for diploid: Minimum minor allele frequency to consider polyploid 1 as variant (in %): Minimum minor allele frequency to consider polyploid 2 as variant (in %):