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Pipeline for SNP analysis
Pipeline V2 (from Fasta)
Pipeline V3 (from VCF)
SNiPlay Galaxy workflows
Tools
General statistics
VCFtools (stats)
Polyploid analysis
SNiPloid
Chromosome Viewer
Chromosome Viewer
SNP density
Diversity analysis
EggLib
VCFtools (sliding window)
Population stratification
sNMF
Admixture
IBD Kinship (Tassel)
PCA / IBS matrix (plink)
Distance tree (FastME)
Association Studies
GWAS Analysis
Others
Cytoscape
SNP Database
Public datasets
Download public datasets
Queries
SNP Queries V3
Documentation
Manual pipeline V2
Manual pipeline V3
How to cite
Login
EggLib
1. Load your data
2. Run
3. Results
Please cite:
De Mita S, Siol M.
EggLib: processing, analysis and simulation tools for population genetics and genomics.
BMC Genet. 2012 Apr 11;13:27. (
PubMed
)
