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Pipeline for SNP analysis
Pipeline V2 (from Fasta)
Pipeline V3 (from VCF)
SNiPlay Galaxy workflows
Tools
General statistics
VCFtools (stats)
Polyploid analysis
SNiPloid
Chromosome Viewer
Chromosome Viewer
SNP density
Diversity analysis
EggLib
VCFtools (sliding window)
Population stratification
sNMF
Admixture
IBD Kinship (Tassel)
PCA / IBS matrix (plink)
Distance tree (FastME)
Association Studies
GWAS Analysis
Others
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SNP Queries V3
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Manual pipeline V2
Manual pipeline V3
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Select the database:
citrus_micrantha
lasiodiplodia
citrus_clementina
Poncirus
Citrus
hevea_brasiliensis
Grapevine_v2
oryza_sativa_MSU7
citrus_sinensis_GCA_022201065
my_species
citrus_medica
eremocitrus_glauca
citrus_maxima
Microcitrus
citrus_reticulata