New version: SNiPlay3 for managing large SNP datasets!!!
It allows to manage SNPs derived from NGS technologies (WGRS, GBS, RNASeq...) and compute on the web series of tools for analyses at a whole-genome scale...
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SNiPlay offers two types of pipeline depending on input data format:
  • Pipeline V3: Analyze VCF files derived from SNP calling performed on NGS data (RNASeq, WGRS, GBS...)
  • Pipeline V2: Analyze Fasta alignment files or chromatograms derived from Sanger technology.
SNiPlay is part of the South Green bioinformatics platform.

Fundings

This development was supported and financed by:

INRA IRD

Publications

Dereeper A, Homa F, Andres G, Sempere G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations.. Nucleic Acids Res. 2015 Jul 1;43(W1) (PubMed)

Dereeper A., Nicolas S., Lecunff L., Bacilieri R., Doligez A., Peros JP., Ruiz M., This P. SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.. BMC Bioinformatics. 2011. May 5;12(1):134. (PubMed)


For general questions, comments or problems about the site or the data, please contact us at alexis.dereeper@ird.fr

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